Research Scientist, Novonesis, Next Generation Sequencing Department
The "Go Long" is a project that pretends to replace the short
reads to long reads at the NGS team in Novonesis. Here we will explore the
transition from Illumina's short-read sequencing to Oxford Nanopore
Technologies (ONT) long-read sequencing, focusing on the benefits of hybrid
assemblies and the eventual goal of relying solely on long reads. As sequencing
technologies evolve, the ability to achieve more comprehensive and accurate
genomic assemblies is crucial for advancing research across various fields.
This talk will discuss our current approach of utilizing hybrid assemblies to
leverage the strengths of both Illumina and ONT, highlighting how this
combination enhances genomic resolution, structural variant detection, and
metagenomics applications. We will also present case studies demonstrating the
real-world impact of hybrid assemblies and how they have led to improved
results in complex genomic regions. The ultimate goal of the "Go
Long" project is to rely exclusively on ONT for its long-read
capabilities, eliminating the need for hybrid assemblies and offering a more
direct path to high-quality genomic data. This presentation will show you the
transformative potential of transitioning to ONT, the role of automation in
sequencing workflows, and the short-long story of the "Go Long"
project.